PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28659_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 153aa    MW: 17350.3 Da    PI: 7.2727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28659_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.5e-08103125426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+f++rtG Ck+G  CkF+H+
  Neem_28659_f_3 103 EDCSFYLRTGCCKFGFYCKFNHP 125
                     89********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0799127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.32E-5103126IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5103125IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MCGRKIQREL GQKSPPGPRS FGKMVDVWEK NTTGTWAEES SWSPKRDKTQ FSAQEQEQAL  60
VDGFRKNVAL NEAENMCKES DNLDGNGESN GTNHEYPLRP YAEDCSFYLR TGCCKFGFYC  120
KFNHPVRRGF QGVKEMEGGG IVEHQQGQIQ CKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469940.19e-42PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
RefseqXP_006469941.12e-42PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2
TrEMBLA0A067DSB21e-41A0A067DSB2_CITSI; Uncharacterized protein
STRINGGLYMA04G36670.11e-15(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2297134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-15C3H family protein